Stem-loop sequence zma-MIR395i

Accession

MI0013217 (change log)

Description

Zea mays miR395i stem-loop

Gene family

MIPF0000016; MIR395

Literature search

18 open access papers mention zma-MIR395i
(84 sentences)

Stem-loop

   --        a               accu      a 
5'   aguucccu caagcacuucacgau    uggcuu a
     |||||||| |||||||||||||||    |||||| u
3'   ucaagggg guuugugaaguguug    accgga a
   uc        -               ----      a 

Deep sequencing

169 reads, 1.18e+03 reads per million, 19 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr2: 6286588-6286657 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR395i

• zma-MIR395a: chr2: 6288043-6288191 [-]
• zma-MIR395b: chr2: 6287388-6287501 [-]
• zma-MIR395h: chr2: 6287229-6287313 [-]
• zma-MIR395i: chr2: 6286588-6286657 [-]
• zma-MIR395e: chr2: 6286411-6286495 [-]
• zma-MIR395g: chr2: 6277107-6277172 [-]
• zma-MIR395f: chr2: 6276947-6277016 [-]

Database links

• miRBase Tracker:MI0013217

Mature sequence zma-miR395i-5p

• Accession: MIMAT0015341
• Previous IDs: zma-miR395i*
• Sequence: 2 - guucccuacaagcacuucacga - 23
• Deep sequencing: 28 reads, 8 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR395i-3p

• Accession: MIMAT0014006
• Previous IDs: zma-miR395i
• Sequence: 49 - gugaaguguuugggggaacuc - 69
• Deep sequencing: 138 reads, 119 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).