miRBase entry: zma-MIR395j

Stem-loop zma-MIR395j


Accession
MI0013218
Description
Zea mays zma-MIR395j precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
18 open access papers mention zma-MIR395j
(85 sentences)

Sequence

4 reads, 235 reads per million, 3 experiments
aGUUCCCUUCAAGCACUUCACAUgaggcaccauucaaauaacacauuucaagauuaggugcauGUGAAGUGUUUGGGGGAACUCu
((((((((.((((((((((((((...(((((.........................)))))))))))))))))))))))))))..

Structure
--        U              gag     auucaaauaac 
  aGUUCCCU CAAGCACUUCACAU   gcacc           a
  |||||||| ||||||||||||||   |||||           c
  UCAAGGGG GUUUGUGAAGUGua   cgugg           a
uC        -              ---     auuagaacuuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature zma-miR395j-5p

Accession MIMAT0015342
Description Zea mays zma-miR395j-5p mature miRNA
Sequence 2 - GUUCCCUUCAAGCACUUCACAU - 23
Evidence experimental
Illumina [1]

Mature zma-miR395j-3p

Accession MIMAT0014007
Description Zea mays zma-miR395j-3p mature miRNA
Sequence 64 - GUGAAGUGUUUGGGGGAACUC - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716