miRBase entry: zma-MIR395m

Stem-loop zma-MIR395m


Accession
MI0013221
Description
Zea mays zma-MIR395m precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
18 open access papers mention zma-MIR395m
(85 sentences)

Sequence

aGUUCCUUUCAAACACUUCACAUggagcuucucauugguggauauauucuugagacccguGUGAAGUGUUUGGAGGAACUCu
((((((((.((((((((((((((((.(..(((((..((((....))))..))))))))))))))))))))))))))))))..

Structure
--        U                a cu     uu    g 
  aGUUCCUU CAAACACUUCACAUgg g  ucuca  ggug a
  |||||||| |||||||||||||||| |  |||||  ||||  
  UCAAGGAG GUUUGUGAAGUGugcc c  agagu  uuau u
uC        -                - --     uc    a 


Annotation confidence Not enough data
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Genome context
chr10: 78600541-78600622 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from zma-MIR395m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR395m-5p

Accession MIMAT0015345
Description Zea mays zma-miR395m-5p mature miRNA
Sequence 2 - GUUCCUUUCAAACACUUCACAU - 23
Evidence not_experimental

Mature zma-miR395m-3p

Accession MIMAT0014010
Description Zea mays zma-miR395m-3p mature miRNA
Sequence 61 - GUGAAGUGUUUGGAGGAACUC - 81
Evidence not_experimental

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716