miRBase entry: zma-MIR395n

Stem-loop zma-MIR395n


Accession
MI0013222
Description
Zea mays zma-MIR395n precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
19 open access papers mention zma-MIR395n
(86 sentences)

Sequence

5 reads, 15 reads per million, 2 experiments
aGUUCUCUACAAGCACUUCACGAggcuucguacugagagcuuuuGUGAAGUGUUUGGGGGAACUCu
((((((((.(((((((((((((((((((........)))).)))))))))))))))))))))))..

Structure
--        A               -    cgu 
  aGUUCUCU CAAGCACUUCACGAg gcuu   a
  |||||||| ||||||||||||||| ||||    
  UCAAGGGG GUUUGUGAAGUGuuu cgag   c
uC        -               u    agu 


Annotation confidence Not enough data
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Genome context
chr10: 145465911-145465976 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from zma-MIR395n
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR395n-5p

Accession MIMAT0015346
Description Zea mays zma-miR395n-5p mature miRNA
Sequence 2 - GUUCUCUACAAGCACUUCACGA - 23
Evidence experimental
Illumina [1]

Mature zma-miR395n-3p

Accession MIMAT0014011
Description Zea mays zma-miR395n-3p mature miRNA
Sequence 45 - GUGAAGUGUUUGGGGGAACUC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716