Stem-loop sequence zma-MIR396e

Accession

MI0013225 (change log)

Description

Zea mays miR396e stem-loop

Gene family

MIPF0000047; MIR396

Literature search

22 open access papers mention zma-MIR396e
(77 sentences)

Stem-loop

   --       a          a       uucuucucucucuuagaagggccguauagcuucuuugaaccucucucucucucuc 
5'   uuuccac gcuuucuuga cuucuuc                                                       u
     ||||||| |||||||||| |||||||                                                        
3'   aagggug cgaaagaacu gaagaag                                                       c
   ag       c          g       ccucuagucucucgcucuccgucucuuacuucuuucacaagcacaugugaaaacu 

Deep sequencing

1445 reads, 748 reads per million, 143 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr4: 176331864-176332029 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR396e

• zma-MIR396e: chr4: 176331864-176332029 [-]
• zma-MIR396a: chr4: 176326883-176327019 [+]

Database links

• miRBase Tracker:MI0013225

Mature sequence zma-miR396e-5p

• Accession: MIMAT0014014
• Previous IDs: zma-miR396e
• Sequence: 2 - uuccacagcuuucuugaacuu - 22
• Deep sequencing: 824 reads, 113 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR396e-3p

• Accession: MIMAT0015349
• Previous IDs: zma-miR396e*
• Sequence: 145 - ggucaagaaagccgugggaag - 165
• Deep sequencing: 357 reads, 111 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).