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miRBase |
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Stem-loop sequence zma-MIR396e |
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Accession | MI0013225 (change log) | |||||
Description | Zea mays miR396e stem-loop | |||||
Gene family | MIPF0000047; MIR396 | |||||
Literature search |
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22 open access papers mention zma-MIR396e | |||||
Stem-loop |
-- a a uucuucucucucuuagaagggccguauagcuucuuugaaccucucucucucucuc 5' uuuccac gcuuucuuga cuucuuc u ||||||| |||||||||| ||||||| 3' aagggug cgaaagaacu gaagaag c ag c g ccucuagucucucgcucuccgucucuuacuucuuucacaagcacaugugaaaacu |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence zma-miR396e-5p |
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Accession | MIMAT0014014 |
Previous IDs | zma-miR396e |
Sequence |
2 - uuccacagcuuucuugaacuu - 22 |
Deep sequencing | 824 reads, 113 experiments |
Evidence | experimental; Illumina [1] |
Mature sequence zma-miR396e-3p |
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Accession | MIMAT0015349 |
Previous IDs | zma-miR396e* |
Sequence |
145 - ggucaagaaagccgugggaag - 165 |
Deep sequencing | 357 reads, 111 experiments |
Evidence | experimental; Illumina [1] |
References |
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1 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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