Stem-loop sequence zma-MIR397a

Accession

MI0013229 (change log)

Description

Zea mays miR397a stem-loop

Literature search

11 open access papers mention zma-MIR397a
(56 sentences)

Stem-loop

   -  cau       -    uug     g ggagcauguacgucuucccgggcuucacuuucagcuugaacgu 
5'  gu   ugagcgc agcg   augau c                                           g
    ||   ||||||| ||||   ||||| |                                           u
3'  ca   acucgcg uugc   uacua g                                           c
   u  auu       a    cga     a aaauaugauugaguauagguaugaauacuauacguacgugcgu 

Deep sequencing

593 reads, 537 reads per million, 153 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr3: 183569171-183569313 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013229

Mature sequence zma-miR397a-5p

• Accession: MIMAT0014018
• Previous IDs: zma-miR397a
• Sequence: 2 - ucauugagcgcagcguugaug - 22
• Deep sequencing: 267 reads, 129 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR397a-3p

• Accession: MIMAT0015352
• Previous IDs: zma-miR397a*
• Sequence: 122 - uagccguuagcgcucauuaacu - 143
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).