miRBase entry: zma-MIR397b

Stem-loop zma-MIR397b


Accession
MI0013230
Description
Zea mays zma-MIR397b precursor miRNA
Gene family
MIPF0000120; MIR397

Literature search
12 open access papers mention zma-MIR397b
(72 sentences)

Sequence

102 reads, 1114 reads per million, 3 experiments
aUCAUUGAGCGCAGCGUUGAUGagccagccgccgugccuccccugucggcugcggcggcucaCCAGCGCUGCACUCAAUUACGc
...((((((.(((((((((.((((((.(((((...(((.........))).))))))))))).))))))))).)))))).....

Structure
--aUC      C         A      a     cgu   ucc 
     AUUGAG GCAGCGUUG UGagcc gccgc   gcc   c
     |||||| ||||||||| |||||| |||||   |||   c
     UAACUC CGUCGCGAC acucgg cggcg   cgg   u
cGCAU      A         C      -     --u   cug 


Annotation confidence Not enough data
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Genome context
chr5: 84610591-84610674 [-]

Database links

Mature zma-miR397b-5p

Accession MIMAT0014019
Description Zea mays zma-miR397b-5p mature miRNA
Sequence 2 - UCAUUGAGCGCAGCGUUGAUG - 22
Evidence experimental
Illumina [1]
Database links

Mature zma-miR397b-3p

Accession MIMAT0015353
Description Zea mays zma-miR397b-3p mature miRNA
Sequence 63 - CCAGCGCUGCACUCAAUUACG - 83
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716