miRBase entry: zma-MIR398a

Stem-loop zma-MIR398a


Accession
MI0013231
Description
Zea mays zma-MIR398a precursor miRNA
Gene family
MIPF0000871; MIR398_2

Literature search
15 open access papers mention zma-MIR398a
(59 sentences)

Sequence

12 reads, 184 reads per million, 5 experiments
gGGGGCGAACUGAGAACACAUGagaauaaugagaugagauugcucgccucgcgguacgguucgugcuggccuggaccaccgucgucgccguucaucuuguacgcauaauaaugcugcaUGUGUUCUCAGGUCGCCCCCGc
((((((((.(((((((((((((......(((((((((....((..((..((((((..((((((........)))))))))).))..)).)))))))))))..((((....))))..))))))))))))).))))))))..

Structure
--        A             ----------agaaua         gauu  uc  cu  -    ac      ugc 
  gGGGGCGA CUGAGAACACAUG                augagauga    gc  gc  cg cggu  gguucg   u
  |||||||| |||||||||||||                |||||||||    ||  ||  || ||||  ||||||    
  CCCCCGCU GACUCUUGUGUac                uguucuacu    ug  cg  gc gcca  ccaggu   g
cG        G             gucguaauaauacgca         ----  -c  cu  u    --      ccg 


Annotation confidence Not enough data
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Genome context
chr2: 174319898-174320037 [+]

Database links

Mature zma-miR398a-5p

Accession MIMAT0015354
Description Zea mays zma-miR398a-5p mature miRNA
Sequence 2 - GGGGCGAACUGAGAACACAUG - 22
Evidence experimental
Illumina [1]

Mature zma-miR398a-3p

Accession MIMAT0014020
Description Zea mays zma-miR398a-3p mature miRNA
Sequence 119 - UGUGUUCUCAGGUCGCCCCCG - 139
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716