Stem-loop zma-MIR398b

Accession

MI0013232

Description

Zea mays zma-MIR398b precursor miRNA

Gene family

MIPF0000871; MIR398_2

Literature search

16 open access papers mention zma-MIR398b
(63 sentences)

Sequence

22 reads, 901 reads per million, 7 experiments

gGGGGCGGACUGGGAACACAUGggaaugagaugagaucauugcucggucgugcuggccugggccgucggcgcgcguugaucuugcaUGUGUUCUCAGGUCGCCCCCGg
(((((((..(((((((((((((.........((((((((.(((.((.(((.((.(((....)))))))))).))).)))))))))))))))))))))..)))))))..

Structure

--       GA             ggaaugaga        u   u  g   u  u   c 
  gGGGGCG  CUGGGAACACAUG         ugagauca ugc cg ucg gc ggc u
  |||||||  |||||||||||||         |||||||| ||| || ||| || |||  
  CCCCCGC  GACUCUUGUGUac         guucuagu gcg gc ggc ug ccg g
gG       UG             ---------        u   c  -   -  -   g 

Annotation confidence Not enough data

Genome context

chr7: 39887938-39888045 [+]

Mature zma-miR398b-5p

• Accession: MIMAT0015355
• Description: Zea mays zma-miR398b-5p mature miRNA
• Sequence: 2 - GGGGCGGACUGGGAACACAUG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR398b-3p

• Accession: MIMAT0014021
• Description: Zea mays zma-miR398b-3p mature miRNA
• Sequence: 87 - UGUGUUCUCAGGUCGCCCCCG - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716