Stem-loop zma-MIR399g

Accession

MI0013233

Description

Zea mays zma-MIR399g precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

22 open access papers mention zma-MIR399g
(68 sentences)

Sequence

121 reads, 2451 reads per million, 108 experiments

aGGGCAACCCCCCGUUGGCAGGugcgacggcgacguaccccuacccUGCCAAAGGGGAUUUGCCCGGc
.((((((..((((.((((((((((.((((....))).)...)).)))))))).))))..))))))...

Structure

--a      CC    G        -  --c -   g 
   GGGCAA  CCCC UUGGCAGG ug   g acg c
   ||||||  |||| |||||||| ||   | |||  
   CCCGUU  GGGG AACCGUcc au   c ugc g
cGG      UA    A        c  ccc a   a 

Annotation confidence Not enough data

Genome context

chr4: 233618406-233618473 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR399g

Mature zma-miR399g-5p

• Accession: MIMAT0015356
• Description: Zea mays zma-miR399g-5p mature miRNA
• Sequence: 2 - GGGCAACCCCCCGUUGGCAGG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR399g-3p

• Accession: MIMAT0014022
• Description: Zea mays zma-miR399g-3p mature miRNA
• Sequence: 47 - UGCCAAAGGGGAUUUGCCCGG - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716