Stem-loop zma-MIR399h

Accession

MI0013234

Description

Zea mays zma-MIR399h precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

23 open access papers mention zma-MIR399h
(68 sentences)

Sequence

249 reads, 736 reads per million, 3 experiments

aGUGCAGUUCUCCUCUGGCACGaaccaaggcugagcagcuugccccauggcuagcccacgacggcccuuccuUGCCAAAGGAGAAUUGCCCUGc
((.(((((((((((.(((((.(((....(((((....(((.(((....))).)))......))))).)))..))))).))))))))))).))..

Structure

--  U           C     -C   ccaa     --agca   u   c 
  aG GCAGUUCUCCU UGGCA  Gaa    ggcug      gcu gcc c
  || ||||||||||| |||||  |||    |||||      ||| |||  
  UC CGUUAAGAGGA ACCGU  cuu    ccggc      cga cgg a
cG  C           A     uc   ---c     agcacc   u   u 

Annotation confidence High

Genome context

chr5: 150363095-150363188 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR399h

Mature zma-miR399h-5p

• Accession: MIMAT0015357
• Description: Zea mays zma-miR399h-5p mature miRNA
• Sequence: 2 - GUGCAGUUCUCCUCUGGCACG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR399h-3p

• Accession: MIMAT0014023
• Description: Zea mays zma-miR399h-3p mature miRNA
• Sequence: 73 - UGCCAAAGGAGAAUUGCCCUG - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716