miRBase entry: zma-MIR399i

Stem-loop zma-MIR399i


Accession
MI0013235
Description
Zea mays zma-MIR399i precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
22 open access papers mention zma-MIR399i
(66 sentences)

Sequence

302 reads, 1216 reads per million, 8 experiments
aGUGCGGCUCUCCUCUGGCAUGagggcgcgacugagaggcacgaacaguuucuggccuucuccugccaaUGCCAAAGGAGAGUUGCCCUGc
((.(((((((((((.((((((...((((.(...(((((((..(((....)))..))).))))))))).)))))).))))))))))).))..

Structure
--  U           C      Gag    c acu    -   ac   c 
  aG GCGGCUCUCCU UGGCAU   ggcg g   gaga ggc  gaa a
  || ||||||||||| ||||||   |||| |   |||| |||  |||  
  UC CGUUGAGAGGA ACCGUa   ccgu c   cucu ccg  cuu g
cG  C           A      --a    - ---    u   gu   u 


Annotation confidence High
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Genome context
chr5: 150372041-150372131 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from zma-MIR399i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR399i-5p

Accession MIMAT0015358
Description Zea mays zma-miR399i-5p mature miRNA
Sequence 2 - GUGCGGCUCUCCUCUGGCAUG - 22
Evidence experimental
Illumina [1]

Mature zma-miR399i-3p

Accession MIMAT0014024
Description Zea mays zma-miR399i-3p mature miRNA
Sequence 70 - UGCCAAAGGAGAGUUGCCCUG - 90
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716