Stem-loop sequence zma-MIR399j

Accession

MI0013236 (change log)

Description

Zea mays miR399j stem-loop

Gene family

MIPF0000015; MIR399

Literature search

22 open access papers mention zma-MIR399j
(66 sentences)

Stem-loop

   ---a            c       - ag       gucaucgucgccaucgacgacgguugcuuggcucugcuaugcuguguucguuc 
5'     ggcagcucuccu uggcagg c  gcgcgcg                                                     g
       |||||||||||| ||||||| |  |||||||                                                     u
3'     ccguugagagga accgucc g  ugcgcgc                                                     c
   cguc            a       u ca       acguacgugcguacaaugugacguuacguacgugccgaucgaucgugugguac 

Deep sequencing

2553 reads, 1.62e+03 reads per million, 163 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr9: 24309478-24309652 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075BBD2_4577
• miRBase Tracker:MI0013236

Mature sequence zma-miR399j-5p

• Accession: MIMAT0015359
• Previous IDs: zma-miR399j*
• Sequence: 1 - aggcagcucuccucuggcagg - 21
• Deep sequencing: 102 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000759C01_4577

Mature sequence zma-miR399j-3p

• Accession: MIMAT0014025
• Previous IDs: zma-miR399j
• Sequence: 154 - ugccaaaggagaguugcccug - 174
• Deep sequencing: 657 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003CFBD5_4577

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).