miRBase entry: zma-MIR408b

Stem-loop zma-MIR408b


Accession
MI0013237
Description
Zea mays zma-MIR408b precursor miRNA
Gene family
MIPF0000102; MIR408

Literature search
22 open access papers mention zma-MIR408b
(138 sentences)

Sequence

160 reads, 1149 reads per million, 7 experiments
gaCAGGGACGAGGCAGAGCAUGGguagggggccaucaacagaauuccaaauuugauuucuguuugcucgcucacaaaauggagggacucaccacaaacacacucaggcguuguugcucccucccCUGCACUGCCUCUUCCCUGGCuc
..((((((.(((((((.(((.(((.(((((((....(((((((.((.......)).)))))))...((.(((........))).)).........((((.((......)))))))))))))))).))).))))))).))))))....

Structure
--ga      C       A   U   u       -----------------------------------------------cauc       u  ca 
    CAGGGA GAGGCAG GCA GGg agggggc                                                   aacagaa uc  a
    |||||| ||||||| ||| ||| |||||||                                                   ||||||| ||  a
    GUCCCU CUCCGUC CGU ccc ucccucg                                                   uugucuu ag  u
cuCG      U       A   C   -       uuguugcggacucacacaaacaccacucagggagguaaaacacucgcucgu       u  uu 


Annotation confidence Not enough data
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Genome context
chr8: 39583938-39584084 [-]

Database links

Mature zma-miR408b-5p

Accession MIMAT0015360
Description Zea mays zma-miR408b-5p mature miRNA
Sequence 3 - CAGGGACGAGGCAGAGCAUGG - 23
Evidence experimental
Illumina [1]

Mature zma-miR408b-3p

Accession MIMAT0014026
Description Zea mays zma-miR408b-3p mature miRNA
Sequence 125 - CUGCACUGCCUCUUCCCUGGC - 145
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716