Stem-loop sequence zma-MIR528a

Accession

MI0013239 (change log)

Description

Zea mays miR528a stem-loop

Gene family

MIPF0000868; MIR528

Literature search

19 open access papers mention zma-MIR528a
(121 sentences)

Stem-loop

   -            u   g     g  cac   c    uguggcuggaagaagcagccggggcc 
5'  guggaaggggca gca aggag ag   gag gagg                          u
    |||||||||||| ||| ||||| ||   ||| ||||                           
3'  uaccuucuccgu cgu uccuc uc   cuc cucc                          g
   u            c   g     -  ---   a    ucucgaacgcuccccauauaucgugu 

Deep sequencing

5027 reads, 1.74e+03 reads per million, 185 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr1: 6412284-6412406 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075D8F8_4577
• miRBase Tracker:MI0013239

Mature sequence zma-miR528a-5p

• Accession: MIMAT0014028
• Previous IDs: zma-miR528a
• Sequence: 2 - uggaaggggcaugcagaggag - 22
• Deep sequencing: 3616 reads, 141 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000134380_4577

Mature sequence zma-miR528a-3p

• Accession: MIMAT0015362
• Previous IDs: zma-miR528a*
• Sequence: 103 - ccugugccugccucuuccauu - 123
• Deep sequencing: 4 reads, 1 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).