Stem-loop zma-MIR390b

Accession

MI0013244

Description

Zea mays zma-MIR390b precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

13 open access papers mention zma-MIR390b
(101 sentences)

Sequence

1198 reads, 2342 reads per million, 108 experiments

gAAGCUCAGGAGGGAUAGCGCCuaggaaaucacacauagauuggagccacgaagaggaagggagaaugagagagagagagacagagcagcuaugcugcucugucucucucucucacuuucucuuggauccaucucaagguucugucuauauaugaugaaucgauccgaagCGCUAUCUAUCCUGAGCUCCAc
(.(((((((((.(((((((((...(((..(((((.((((((.((((((..((.(((((.(((((((.(.(((((((((((((((((((((...))))))))))))))))))))).).)))))))...))).))))..))))))))))))...)).))).....)))...))))))))).))))))))).)..

Structure

-- A         G         Cua   ---aa   -  --c      u      ac  a  -   --a       u a                     u 
  g AGCUCAGGA GGAUAGCGC   gga     uca ca   auagau ggagcc  ga ga gga   gggagaa g gagagagagagacagagcagc  
  | ||||||||| |||||||||   |||     ||| ||   |||||| ||||||  || || |||   ||||||| | ||||||||||||||||||||| a
  C UCGAGUCCU UCUAUCGCg   ccu     agu gu   uaucug ucuugg  cu cu ccu   uucucuu c cucucucucucugucucgucg  
cA C         A         aag   agcua   a  aua      -      aa  -  a   agg       u a                     u 

Annotation confidence High

Genome context

chr5: 2846327-2846518 [+]

Mature zma-miR390b-5p

• Accession: MIMAT0014033
• Description: Zea mays zma-miR390b-5p mature miRNA
• Sequence: 2 - AAGCUCAGGAGGGAUAGCGCC - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR390b-3p

• Accession: MIMAT0015367
• Description: Zea mays zma-miR390b-3p mature miRNA
• Sequence: 171 - CGCUAUCUAUCCUGAGCUCCA - 191
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716