miRBase entry: sbi-MIR398

Stem-loop sbi-MIR398


Accession
MI0013257
Description
Sorghum bicolor sbi-MIR398 precursor miRNA
Gene family
MIPF0000871; MIR398_2

Literature search
2 open access papers mention sbi-MIR398
(5 sentences)

Sequence

gggggcggacugggaacacaugggaaugagagaugagauugcucggucgugcuggcccugggcucguaguugaucugcuuguaugcaUGUGUUCUCAGGUCGCCCCCGc
(((((((..(((((((((((((.(.(((((((((.((...((((((((.....))))..))))......)).)))).))))).).)))))))))))))..)))))))..

Structure
--       ga             g a     -    g  ---auu    --    g 
  gggggcg  cugggaacacaug g augag agau ag      gcuc  gguc u
  |||||||  ||||||||||||| | ||||| |||| ||      ||||  |||| g
  CCCCCGC  GACUCUUGUGUac u uguuc ucua uu      cggg  ccgg c
cG       UG             g a     g    g  gaugcu    uc    u 


Annotation confidence Not enough data
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Genome context
chr2: 15132480-15132588 [-]

Database links

Mature sbi-miR398

Accession MIMAT0014046
Description Sorghum bicolor sbi-miR398 mature miRNA
Sequence 88 - UGUGUUCUCAGGUCGCCCCCG - 108
Evidence not_experimental

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716