miRBase entry: osa-MIR2925

Stem-loop osa-MIR2925


Accession
MI0013267
Description
Oryza sativa osa-MIR2925 precursor miRNA


Sequence

reads, None reads per million, experiments
uucuugacgccgcccuUGGCGGCCGCGGGCUUCGUcgccgucucacugagcuuggcagccggcuccuuggcaaguccggcagguuucacggccuucagagaagccauucuucugaugcuu
....(((.((((((...(((.((((.(((((..((.((((.(((...)))..)))).)).))).)).))))..))).))).))).))).(((..((((((((....))).))))).))).

Structure
----------------------------uucu   c   -   cuU   -G    C  -   UC  c    -u   a 
                                uga gcc gcc   GGC  GCCG GG GCU  GU gccg  cuc  
                                ||| ||| |||   |||  |||| || |||  || ||||  ||| c
                                acu ugg cgg   cug  cggu cc cgg  cg cggu  gag  
uucguagucuucuuaccgaagagacuuccggc   u   a   --c   aa    u  u   -c  a    uc   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr1: 25801058-25801177 [+]

Database links

Mature osa-miR2925

Accession MIMAT0014056
Description Oryza sativa osa-miR2925 mature miRNA
Sequence 17 - UGGCGGCCGCGGGCUUCGU - 35
Evidence experimental
cloned [1]

References

  1. PubMed ID: 20131478
    Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses
    "Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK"
    "Mol Genet Genomics (2009) 282:463-474