Stem-loop rlcv-mir-rL1-19

Accession

MI0013278

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-19 precursor miRNA

Gene family

MIPF0000991; mir-BART16

Sequence

ucagguguggaauuAUAGAUAGCGUGGGUGUGUGACCuuguuuguuacacaaagAUCACCACCCCCUGUCUGCUuuccacuccuga
(((((.((((((...(((((((.(.(((((.((((...(.(((((...))))).))))))))))))))))))..)))))).)))))

Structure

     u      uuA       C U     U    CCu g     u 
ucagg guggaa   UAGAUAG G GGGUG GUGA   u uuugu  
||||| ||||||   ||||||| | ||||| ||||   | ||||| a
agucc caccuu   GUCUGUC C CCCAC CACU   A aaaca  
     u      -UC       - -     -    --- g     c 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-19-5p

• Accession: MIMAT0016942
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-19-5p mature miRNA
• Sequence: 15 - AUAGAUAGCGUGGGUGUGUGACC - 37
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-19-3p

• Accession: MIMAT0019187
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-19-3p mature miRNA
• Sequence: 55 - AUCACCACCCCCUGUCUGCU - 74
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635