Stem-loop rlcv-mir-rL1-21

Accession

MI0013280

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-21 precursor miRNA

Sequence

ggcugagcugugcaguuUUGAUUGUGGGGGGAGGGCUCUcuuaucuaggcuagAGGCCUCUUCUCACAAUUCUAAUuucacagcucuccagaagcc
((((((((((((.((((..(((((((((((((((.(((((((....)))..)))).)))))))))))))))..)))).))))))))......))))

Structure

    ------        c    UU               G    --   a 
ggcu      gagcugug aguu  GAUUGUGGGGGGAGG CUCU  cuu u
||||      |||||||| ||||  ||||||||||||||| ||||  |||  
ccga      cucgacac uUAA  UUAACACUCUUCUCC GAga  gga c
    agaccu        u    UC               G    uc   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-21-3p

• Accession: MIMAT0016943
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-21-3p mature miRNA
• Sequence: 54 - AGGCCUCUUCUCACAAUUCUAAU - 76
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-21-5p

• Accession: MIMAT0019188
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-21-5p mature miRNA
• Sequence: 18 - UUGAUUGUGGGGGGAGGGCUCU - 39
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635