miRBase entry: rlcv-mir-rL1-23

Stem-loop rlcv-mir-rL1-23


Accession
MI0013282
Description
Rhesus lymphocryptovirus rlcv-mir-rL1-23 precursor miRNA
Gene family
MIPF0000961; mir-BART21


Sequence

uggcugugggggcuggguauUCACUAGUGCUGGCACCUAAGAuaacuagaauugUUAGUUGUCUGCACUGGAGAGUauucgguuucagaaguca
(((((...((((((((((((((.(((((((.((((.((((.(..........).)))).)))).))))))).))))))))))))))...)))))

Structure
     gug              A       U    C    G uaac 
uggcu   ggggcuggguauUC CUAGUGC GGCA CUAA A    u
|||||   |||||||||||||| ||||||| |||| |||| |     
acuga   cuuuggcuuaUGAG GGUCACG CUGU GAUU u    a
     aga              A       U    U    g uaag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rlcv-miR-rL1-23-5p

Accession MIMAT0016945
Description Rhesus lymphocryptovirus rlcv-miR-rL1-23-5p mature miRNA
Sequence 21 - UCACUAGUGCUGGCACCUAAGA - 42
Evidence experimental
Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-23-3p

Accession MIMAT0016946
Description Rhesus lymphocryptovirus rlcv-miR-rL1-23-3p mature miRNA
Sequence 55 - UUAGUUGUCUGCACUGGAGAGU - 76
Evidence experimental
Northern [1], PCR [1], Illumina [2-3]

References

  1. PubMed ID: 19889779
    A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
    "Walz N, Christalla T, Tessmer U, Grundhoff A"
    "J Virol (2010) 84:716-728

  2. PubMed ID: 20219930
    Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
    "Riley KJ, Rabinowitz GS, Steitz JA"
    "J Virol (2010) 84:5148-5157

  3. PubMed ID: 24257599
    Evolutionary conservation of primate lymphocryptovirus microRNA targets
    "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
    "J Virol (2014) 88:1617-1635