Stem-loop rlcv-mir-rL1-25

Accession

MI0013284

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-25 precursor miRNA

Gene family

MIPF0000955; mir-BART9

Sequence

ggggaugauguggcugcugcuggUGCUAGACCCUAAAUUGGAAACaauaauagugauucugUGACAAUUUAAUGGGUCUAGUAGUugcagucuggcccc
((((.......((((((.(((...((((((((((((((((...(((.............)))..)))))))..)))))))))))).))))))...))))

Structure

    augaugu      u   ggU         --       GAA   auaau 
gggg       ggcugc gcu   GCUAGACCC  UAAAUUG   ACa     a
||||       |||||| |||   |||||||||  |||||||   |||     g
cccc       cugacg UGA   UGAUCUGGG  AUUUAAC   Ugu     u
    ----ggu      u   ---         UA       -AG   cuuag 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-25-3p

• Accession: MIMAT0016949
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-25-3p mature miRNA
• Sequence: 62 - UGACAAUUUAAUGGGUCUAGUAGU - 85
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-25-5p

• Accession: MIMAT0019190
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-25-5p mature miRNA
• Sequence: 24 - UGCUAGACCCUAAAUUGGAAAC - 45
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635