miRBase entry: rlcv-mir-rL1-26

Stem-loop rlcv-mir-rL1-26


Accession
MI0013285
Description
Rhesus lymphocryptovirus rlcv-mir-rL1-26 precursor miRNA


Sequence

cgcuggcGCUACACCCGGGAUUCGAAGCagucauugggccucugcUACGAUUCUCCGGGUUUAGCaguugcg
(((.(((((((.((((((((.(((.(((((...........))))).))).)).)))))).)))).))))))

Structure
   u   -    C      -  U   A     ucau 
cgc ggc GCUA ACCCGG GA UCG AGCag    u
||| ||| |||| |||||| || ||| |||||    g
gcg uug CGAU UGGGCC CU AGC Ucguc    g
   -   a    U      U  U   A     uccg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rlcv-miR-rL1-26-3p

Accession MIMAT0016950
Description Rhesus lymphocryptovirus rlcv-miR-rL1-26-3p mature miRNA
Sequence 46 - UACGAUUCUCCGGGUUUAGC - 65
Evidence experimental
Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-26-5p

Accession MIMAT0019191
Description Rhesus lymphocryptovirus rlcv-miR-rL1-26-5p mature miRNA
Sequence 8 - GCUACACCCGGGAUUCGAAGC - 28
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19889779
    A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
    "Walz N, Christalla T, Tessmer U, Grundhoff A"
    "J Virol (2010) 84:716-728

  2. PubMed ID: 20219930
    Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
    "Riley KJ, Rabinowitz GS, Steitz JA"
    "J Virol (2010) 84:5148-5157

  3. PubMed ID: 24257599
    Evolutionary conservation of primate lymphocryptovirus microRNA targets
    "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
    "J Virol (2014) 88:1617-1635