miRBase entry: rlcv-mir-rL1-28

Stem-loop rlcv-mir-rL1-28


Accession
MI0013287
Description
Rhesus lymphocryptovirus rlcv-mir-rL1-28 precursor miRNA


Sequence

guggacccggagagucugucuUGGAAGGCGUUGCUUUCAGCUGuuuauaugguugGAGGAAAGUAUCGCCUUCUAGaauuggcuuguccau
((((((.....(((((.((.((((((((((.(((((((((((((....)))))))))....)))).)))))))))).)).)))))))))))

Structure
      ccgga     u  c          U    ----         u 
guggac     gaguc gu uUGGAAGGCG UGCU    UUCAGCUGu u
||||||     ||||| || |||||||||| ||||    |||||||||  
uaccug     uucgg ua GAUCUUCCGC AUGA    AGguuggua a
      -----     u  a          U    AAGG         u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rlcv-miR-rL1-28-3p

Accession MIMAT0016952
Description Rhesus lymphocryptovirus rlcv-miR-rL1-28-3p mature miRNA
Sequence 56 - GAGGAAAGUAUCGCCUUCUAG - 76
Evidence experimental
Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-28-5p

Accession MIMAT0019193
Description Rhesus lymphocryptovirus rlcv-miR-rL1-28-5p mature miRNA
Sequence 22 - UGGAAGGCGUUGCUUUCAGCUG - 43
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19889779
    A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
    "Walz N, Christalla T, Tessmer U, Grundhoff A"
    "J Virol (2010) 84:716-728

  2. PubMed ID: 20219930
    Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
    "Riley KJ, Rabinowitz GS, Steitz JA"
    "J Virol (2010) 84:5148-5157

  3. PubMed ID: 24257599
    Evolutionary conservation of primate lymphocryptovirus microRNA targets
    "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
    "J Virol (2014) 88:1617-1635