miRBase entry: rlcv-mir-rL1-29

Stem-loop rlcv-mir-rL1-29


Accession
MI0013288
Description
Rhesus lymphocryptovirus rlcv-mir-rL1-29 precursor miRNA
Gene family
MIPF0000983; mir-BART19


Sequence

gcugaguccguguccuaaaaCCAGUCCCAGCAGACAAAACauaguauggucgagugUUUUGUUUGCUUGGGACUGCAGuuagggcgcguaaacucgu
..(((((.((((((((((...(((((((((((((((((((((.(......)..))))))))))))).))))))))...))))))))))...))))).

Structure
gc     --c          aaC        -             -a ua 
  ugagu   cguguccuaa   CAGUCCCA GCAGACAAAACau  g  u
  |||||   ||||||||||   |||||||| |||||||||||||  |   
  gcuca   gcgcgggauu   GUCAGGGU CGUUUGUUUUgug  c  g
-u     aau          GAC        U             ag ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rlcv-miR-rL1-29-3p

Accession MIMAT0016953
Description Rhesus lymphocryptovirus rlcv-miR-rL1-29-3p mature miRNA
Sequence 57 - UUUUGUUUGCUUGGGACUGCAG - 78
Evidence experimental
Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-29-5p

Accession MIMAT0019194
Description Rhesus lymphocryptovirus rlcv-miR-rL1-29-5p mature miRNA
Sequence 21 - CCAGUCCCAGCAGACAAAAC - 40
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19889779
    A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
    "Walz N, Christalla T, Tessmer U, Grundhoff A"
    "J Virol (2010) 84:716-728

  2. PubMed ID: 20219930
    Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
    "Riley KJ, Rabinowitz GS, Steitz JA"
    "J Virol (2010) 84:5148-5157

  3. PubMed ID: 24257599
    Evolutionary conservation of primate lymphocryptovirus microRNA targets
    "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
    "J Virol (2014) 88:1617-1635