miRBase entry: rlcv-mir-rL1-30

Stem-loop rlcv-mir-rL1-30


Accession
MI0013289
Description
Rhesus lymphocryptovirus rlcv-mir-rL1-30 precursor miRNA


Sequence

caggaagcccguguccuggcACCGGUCCUUUGAGGUACGAAACauugugaguuugUUUCGUUUUCGAAGGUCGGCUGUcagugcauguggagauuuucg
..((((((((((((.((((((((((.(((((((((.((((((((.........))))))))))))))))))))).)))))).))))).))...))))).

Structure
ca     ---  -     c      -    U         U        uug 
  ggaag   cc cgugu cuggcA CCGG CCUUUGAGG ACGAAACa   u
  |||||   || ||||| |||||| |||| ||||||||| ||||||||   g
  cuuuu   gg guacg gacUGU GGCU GGAAGCUUU UGCUUUgu   a
-g     aga  u     u      C    -         -        uug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rlcv-miR-rL1-30-3p

Accession MIMAT0016954
Description Rhesus lymphocryptovirus rlcv-miR-rL1-30-3p mature miRNA
Sequence 56 - UUUCGUUUUCGAAGGUCGGCUGU - 78
Evidence experimental
Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-30-5p

Accession MIMAT0019195
Description Rhesus lymphocryptovirus rlcv-miR-rL1-30-5p mature miRNA
Sequence 21 - ACCGGUCCUUUGAGGUACGAAAC - 43
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19889779
    A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
    "Walz N, Christalla T, Tessmer U, Grundhoff A"
    "J Virol (2010) 84:716-728

  2. PubMed ID: 20219930
    Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
    "Riley KJ, Rabinowitz GS, Steitz JA"
    "J Virol (2010) 84:5148-5157

  3. PubMed ID: 24257599
    Evolutionary conservation of primate lymphocryptovirus microRNA targets
    "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
    "J Virol (2014) 88:1617-1635