Stem-loop rlcv-mir-rL1-31

Accession

MI0013290

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-31 precursor miRNA

Sequence

ugccggguaaugcccggUCGCUUACGCCGACCGCGUAACuugugguauauuguUAGGCGUGUCGUCGUAAGCAGCcgggcgacccggcg
.(((((((..((((((((.(((((((.(((((((.((((............)))).))).)))).))))))).))))))))))))))).

Structure

u       aa        C       C    -   G    uugug 
 gccgggu  ugcccggU GCUUACG CGAC CGC UAAC     g
 |||||||  |||||||| ||||||| |||| ||| ||||      
 cggccca  gcgggcCG CGAAUGC GCUG GCG AUug     u
g       --        A       U    U   G    uuaua 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-31-5p

• Accession: MIMAT0016955
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-31-5p mature miRNA
• Sequence: 18 - UCGCUUACGCCGACCGCGUAAC - 39
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-31-3p

• Accession: MIMAT0016956
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-31-3p mature miRNA
• Sequence: 54 - UAGGCGUGUCGUCGUAAGCAGC - 75
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635