Stem-loop rlcv-mir-rL1-33

Accession

MI0013292

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-33 precursor miRNA

Sequence

guggacuuccagacCAUUGUCUUCAUUUGCCCUUGCguguacaugacugcAAAGAGCAAAUGGGGGGAAUAGCcugugaguuccgc
((((((((.(((.(.(((.((((((((((((.(((((.((.....))))))).).))))))))))).))).).))).))).)))))

Structure

     -   c   a C   G           - C     u  a 
gugga cuu cag c AUU UCUUCAUUUGC C UUGCg gu c
||||| ||| ||| | ||| ||||||||||| | ||||| || a
cgccu gag guc G UAA GGGGGUAAACG G AAcgu ca u
     u   u   C A   G           A A     -  g 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-33-5p

• Accession: MIMAT0016959
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-33-5p mature miRNA
• Sequence: 15 - CAUUGUCUUCAUUUGCCCUUGC - 36
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-33-3p

• Accession: MIMAT0019196
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-33-3p mature miRNA
• Sequence: 51 - AAAGAGCAAAUGGGGGGAAUAGC - 73
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635