miRBase entry: csi-MIR164a

Stem-loop csi-MIR164a


Accession
MI0013295
Description
Citrus sinensis csi-MIR164a precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
6 open access papers mention csi-MIR164a
(41 sentences)

Sequence

guguagagcaagaUGGAGAAGCAGGGCACGUGCAuuacuaacucaaccgcacauacaucuacuaacaaaaauuaauuaauccacacauuuugaagaaaccaaaucaagaagcagcaugcucuuucuguuguuauagcucagucaugaguugaguuauuucuuCAUGUGCCCUUCUUCCCCAUCaugaccgcggcaccuuguguguguguguguaucaucagggaucagcucaagaucug
((((.(..((.(((((.((((.((((((((((......(((((((..........................................((((((..........))))))(((((((.........)))))))...(((((....))))))))))))......)))))))))).)))).))))).))....).))))((((.((..((.(.((......)).).))..)).)))).....

Structure
-------------------------------------------    a --ag  a     A    C          CAuuac       accgcacauacaucuacuaacaaaaauuaauuaauccacacauuuugaaga 
                                           gugu g    ca gaUGG GAAG AGGGCACGUG      uaacuca                                                   a
                                           |||| |    || ||||| |||| ||||||||||      |||||||                                                    
                                           cacg c    gu CUACC CUUC UCCCGUGUAC      auugagu                                                   a
gucuagaacucgacuagggacuacuauguguguguguguguuc    g gcca  a     C    U          uucuuu       ugaguacugacucgauauuguugucuuucucguacgacgaagaacuaaacc 


Annotation confidence Not enough data
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Genome context
chr6: 11293723-11293961 [+]

Database links

Mature csi-miR164a-5p

Accession MIMAT0014069
Description Citrus sinensis csi-miR164a-5p mature miRNA
Sequence 14 - UGGAGAAGCAGGGCACGUGCA - 34
Evidence experimental
Northern [1], Illumina [2-3]

Mature csi-miR164a-3p

Accession MIMAT0037371
Description Citrus sinensis csi-miR164a-3p mature miRNA
Sequence 163 - CAUGUGCCCUUCUUCCCCAUC - 183
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 19585144
    Identification and characterization of 27 conserved microRNAs in citrus
    "Song C, Fang J, Li X, Liu H, Thomas Chao C"
    "Planta (2009) 230:671-685

  2. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  3. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113