miRBase entry: csi-MIR166e

Stem-loop csi-MIR166e


Accession
MI0013296
Description
Citrus sinensis csi-MIR166e precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
7 open access papers mention csi-MIR166e
(12 sentences)

Sequence

ggggagcuuuuuguuuugaggGGAAUGUUGUCUGGCUCGAGGacacugcuuguugauccauuaauuuuacguauucucucauagaucuagcaucugaaugguggauaacaauauacggauucagcuuauuuggcgucgUCGGACCAGGCUUCAUUCCCCccaauauauugcuuccau
.((((((....(((.(((.((((((((..((((((.((((.(((.((....((((((((...........((((..........(((((.(((....))).)))))......))))))).)))))......)).))).)))).))))))..)))))))).))).)))..))))))..

Structure
-g      uuuu   u   a        UU      C    G   a  --gcuu     -   auuaauuuuac    ucucucauag     g   c 
  gggagc    ugu uug ggGGAAUG  GUCUGG UCGA Gac cu      guuga ucc           guau          aucua cau u
  ||||||    ||| ||| ||||||||  |||||| |||| ||| ||      ||||| |||           ||||          ||||| |||  
  ccuucg    aua aac CCCCUUAC  CGGACC GGCU cug gg      cgacu agg           caua          uaggu gua g
ua      --uu   u   c        UU      A    g   c  uuuauu     u   -----------    ----uaacaa     g   a 


Annotation confidence Not enough data
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Genome context
JH999119.1: 2541222-2541398 [+]

Database links

Mature csi-miR166e-5p

Accession MIMAT0017386
Description Citrus sinensis csi-miR166e-5p mature miRNA
Sequence 22 - GGAAUGUUGUCUGGCUCGAGG - 42
Evidence experimental
Illumina [2-3]

Mature csi-miR166e-3p

Accession MIMAT0014070
Description Citrus sinensis csi-miR166e-3p mature miRNA
Sequence 139 - UCGGACCAGGCUUCAUUCCCC - 159
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19585144
    Identification and characterization of 27 conserved microRNAs in citrus
    "Song C, Fang J, Li X, Liu H, Thomas Chao C"
    "Planta (2009) 230:671-685

  2. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  3. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113