Accession
MI0013302
Description
Citrus sinensis
csi-MIR172a precursor miRNA
Gene family
MIPF0000035;
MIR172
Literature search
5 open access papers mention csi-MIR172a
(17 sentences)
(17 sentences)
Sequence
gucaccuuaaaacagucguugcucgcuguaGCAGCGUCCUCAAGAUUCACAugcagucuaaaggcaaaagcagcaauuuuucuucauuuuugcuugccuugguuuuugucagugAGAAUCUUGAUGAUGCUGCAacggcgauuaaugacuagcuaccaacaa
.............((((((((.(((((((.((((((((.(((((((((.(((((((....((((((..(((((.(((........))).))))))))))).....))))..))).))))))))).)))))))).))))))).))))))))............
.............((((((((.(((((((.((((((((.(((((((((.(((((((....((((((..(((((.(((........))).))))))))))).....))))..))).))))))))).)))))))).))))))).))))))))............
Structure
gucaccuuaaaac c a C A -- -ucua aa c uuu
agucguug ucgcugu GCAGCGUC UCAAGAUUC CAu gcag aaggca agcag aau u
|||||||| ||||||| |||||||| ||||||||| ||| |||| |||||| ||||| |||
ucaguaau agcggca CGUCGUAG AGUUCUAAG gug uguu uuccgu ucguu uua c
-aacaaccaucga u A U A ac uuugg -- u cuu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
chr1: 27309962-27310123 [-]
Database links
Mature csi-miR172a-5p
| Accession | MIMAT0017387 |
| Description | Citrus sinensis csi-miR172a-5p mature miRNA |
| Sequence | 31 - GCAGCGUCCUCAAGAUUCACA - 51 |
| Evidence |
experimental
Illumina [2-3] |
Mature csi-miR172a-3p
| Accession | MIMAT0014076 |
| Description | Citrus sinensis csi-miR172a-3p mature miRNA |
| Sequence | 115 - AGAAUCUUGAUGAUGCUGCA - 134 |
| Evidence |
experimental
Northern [1], Illumina [2-3] |
References
|
