Stem-loop ctr-MIR319

Accession

MI0013303

Description

Citrus trifoliata ctr-MIR319 precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

2 open access papers mention ctr-MIR319
(3 sentences)

Sequence

uuaagcugggagcuuucuucgguccacuuauggguggcaauaggauuuaauuagcugcugacucauucauccaaauacuuaguaaagggucgaaauggauacccaguaaaugagugaaugaugcgggagacaaauugaaucuuaagcuuccugugcUUGGACUGAAGGGAGCUCCCauugcucgcu
...(((((((((((((((((((((((..((((((.(((..((((((((((((.(((.(((..((((((((.((..((((.......(((((......))..)))))))..)).))))))))..))).)).).)))))))))))).))).))))))..))))))))))))))))))))..)))....

Structure

-uua   --                    cu      u   aa            a -  g   ac        c  aa    uaguaaa   --  ga 
    agc  ugggagcuuucuucggucca  uauggg ggc  uaggauuuaauu g cu cug  ucauucau ca  uacu       ggg  uc  a
    |||  ||||||||||||||||||||  |||||| |||  |||||||||||| | || |||  |||||||| ||  ||||       |||  ||   
    ucg  aCCCUCGAGGGAAGUCAGGU  gugucc ucg  auucuaaguuaa c ga ggc  aguaagug gu  auga       ccc  ag  a
ucgc   uu                    Uc      u   -a            a a  g   gu        a  aa    -------   au  gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ctr-miR319

• Accession: MIMAT0014077
• Description: Citrus trifoliata ctr-miR319 mature miRNA
• Sequence: 157 - UUGGACUGAAGGGAGCUCCC - 176
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685