miRBase entry: csi-MIR398a

Stem-loop csi-MIR398a


Accession
MI0013305
Description
Citrus sinensis csi-MIR398a precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
3 open access papers mention csi-MIR398a
(8 sentences)

Sequence

caacagaugugaaaccccagaggagugaaccugAGAACAGAGGGUGGCGUUGGCUuaaauuugauuugcauugcugcugccugcuccugccauacauuaaaucaaaaagauuguauguggccaacgcaccuUGUGUUCUCAGGUCACCCCUUugggaauucaauugucaaucagcacgugucaucaaguuacucaauugcucuaacauucgcugcuucugauuca
.........((((..((((((((.((((.((((((((((.((((((.((((((((............(((..((....)).))).........((((..((((.....))))..)))))))))))))))))).)))))))))))))).))))))))..))))...((((..((((..((((.....(((.........)))...))))..))))....))))...

Structure
------------------------------------------------------caacagaug    ac        a    a          G      G        uaaauuugauuugcauugcugcugccugcu 
                                                               ugaa  cccagagg guga ccugAGAACA AGGGUG CGUUGGCU                              c
                                                               ||||  |||||||| |||| |||||||||| |||||| ||||||||                              c
                                                               acuu  ggguUUCC CACU GGACUCUUGU Uuccac gcaaccgg                              u
acuuagucuucgucgcuuacaaucucguuaacucauugaacuacugugcacgacuaacuguua    aa        C    -          G      -        uguauguuagaaaaacuaaauuacauaccg 


Annotation confidence Not enough data
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Genome context
chr7: 1333347-1333571 [+]

Database links

Mature csi-miR398a-3p

Accession MIMAT0014079
Description Citrus sinensis csi-miR398a-3p mature miRNA
Sequence 132 - UGUGUUCUCAGGUCACCCCUU - 152
Evidence experimental
Northern [1], Illumina [2]

Mature csi-miR398a-5p

Accession MIMAT0037372
Description Citrus sinensis csi-miR398a-5p mature miRNA
Sequence 34 - AGAACAGAGGGUGGCGUUGGCU - 55
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19585144
    Identification and characterization of 27 conserved microRNAs in citrus
    "Song C, Fang J, Li X, Liu H, Thomas Chao C"
    "Planta (2009) 230:671-685

  2. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113