Stem-loop crt-MIR166a

Accession

MI0013310

Description

Citrus reticulata crt-MIR166a precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention crt-MIR166a
(7 sentences)

Sequence

uucccuucagaaucaaauucauuguuugauuuuuuuugagagguuaugguugaugggaauguuguuuggcucgagggucaucuagguuuucaaaauuuucucggacuuucuuucuugcuuuuauuuuuccaggaaaauuauguuauuugccuaugugaucUCGGACCAGGCUUCAUUCCCGUcaaccgacgguuucucucuu
........((((((((((.....))))))))))....((((((...(((((((((((((((..((((((.((((((.((((.(((((...((.((((((((.(((......................))).)))))))).))......))))).)))))))))).))))))..)))))))))))))))......))))))..

Structure

uucccuucagaaucaaauucauuguuugauuuuuuuu      ---uua               uu      c      g    c     ---uuu  a        c   cuuucuuucu 
                                     gagagg      ugguugaugggaaug  guuugg ucgagg ucau uaggu      ca aauuuucu gga          u
                                     ||||||      |||||||||||||||  |||||| |||||| |||| |||||      || |||||||| |||           
                                     cucucu      gccaacUGCCCUUAC  CGGACC GGCUcu agug auccg      gu uuaaaagg ccu          g
-----------------------------------uu      uuggca               UU      A      -    u     uuuauu  a        a   uuuuauuuuc 

Annotation confidence Not enough data

Genome context

Unknown

Mature crt-miR166a

• Accession: MIMAT0014084
• Description: Citrus reticulata crt-miR166a mature miRNA
• Sequence: 161 - UCGGACCAGGCUUCAUUCCCGU - 182
• Evidence: not_experimental

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685