Stem-loop crt-MIR166b

Accession

MI0013311

Description

Citrus reticulata crt-MIR166b precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention crt-MIR166b
(5 sentences)

Sequence

uauauguucucaucuggguuagcuuaggguuuugagagcaggaagccaugaaagucgauggaugggagaaaaaugauuguuucugaggggacuguugucuggcucgaugcauuaauaauaauuauaauuauauaauuauaauuaucaugaaaaaaggguaUCGGACCAGGCUUCAUUCCCUUcagaaucaaauucauuguuu
......(((((((((..(((.((((..((((((........))))))....)))).))))))))))))...((((((((.(((((((((((.((..((((((.(((((((....((.((((((((((((....)))))))))))).)).........))))))).))))))..)).))))))))))).)))..)))))....

Structure

uauauguucucaucuggguuagcuuaggguuuugagagcaggaagccaugaaagucgauggaugggagaaa     --   u           c  uu      c       -----auua  a            a 
                                                                       aauga  uug uucugagggga ug  gucugg ucgaugc         au auaauuauaauu u
                                                                       |||||  ||| ||||||||||| ||  |||||| |||||||         || ||||||||||||  
                                                                       uuacu  aac aagacUUCCCU AC  CGGACC GGCUaug         ua uauuaauauuaa a
-------------------------------------------------------------------uuug     ua   u           U  UU      A       ggaaaaaag  c            u 

Annotation confidence Not enough data

Genome context

Unknown

Mature crt-miR166b

• Accession: MIMAT0014085
• Description: Citrus reticulata crt-miR166b mature miRNA
• Sequence: 161 - UCGGACCAGGCUUCAUUCCCUU - 182
• Evidence: not_experimental

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685