Stem-loop csi-MIR166a

Accession

MI0013315

Description

Citrus sinensis csi-MIR166a precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

7 open access papers mention csi-MIR166a
(17 sentences)

Sequence

gaagcuauuucuuuugaggGGAAUGUUGUCUGGCUCGAGGccacuaacuagaucuuugauuuaaucucaguugaucauauauuuguuucauuuuucuuccauaaaauuuaauuauauugagauacccaucauugaucuuaagauaauuaaguuagugacgUCGGACCAGGCUUCAUUCCCCCcaauuauugcuucuaucugc
(((((........(((.((((((((..((((((.((((.(.(((((((((((((..((((...((((((((((((..((.((((...................)))).)))))).))))))))....))))..)))))...........)))))))).).)))).))))))..)))))))).))).....))))).......

Structure

-------     uauuucuu   a        UU      C    G c        -----------     uu    -uua        -    ca  u    guuucauu 
       gaagc        uug ggGGAAUG  GUCUGG UCGA G cacuaacu           agauc  ugau    aucucagu ugau  ua auuu        u
       |||||        ||| ||||||||  |||||| |||| | ||||||||           |||||  ||||    |||||||| ||||  || ||||        u
       cuucg        aac CCCCUUAC  CGGACC GGCU c gugauuga           ucuag  acua    uagaguua auua  au uaaa        u
cgucuau     ---uuauu   C        UU      A    g a        auuaauagaau     uu    ccca        u    --  u    auaccuuc 

Annotation confidence Not enough data

Genome context

chr5: 444262-444463 [-]

Mature csi-miR166a-3p

• Accession: MIMAT0014090
• Description: Citrus sinensis csi-miR166a-3p mature miRNA
• Sequence: 161 - UCGGACCAGGCUUCAUUCCCCC - 182
• Evidence: experimental ; Illumina [2]

Mature csi-miR166a-5p

• Accession: MIMAT0037373
• Description: Citrus sinensis csi-miR166a-5p mature miRNA
• Sequence: 20 - GGAAUGUUGUCUGGCUCGAGG - 40
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113