Stem-loop bma-mir-36c

Accession

MI0013328

Description

Brugia malayi bma-mir-36c precursor miRNA

Gene family

MIPF0000096; mir-36

Literature search

1 open access papers mention bma-mir-36c
(15 sentences)

Sequence

uagcuauuCGGGAUAGUCUCUCACGGUAGAGCuugaaaaucaauuugcUCACCGGAGACAUUGUUCCGCAuagguacgguacauuuccguc
.(.((((.(((((((((.((((.((((.((((((((...))))...)))))))))))).))))))))).)))).)((((.......)))).

Structure

---------------u g    u         C    A    A    ---    a 
                a cuau CGGGAUAGU UCUC CGGU GAGC   uuga  
                | |||| ||||||||| |||| |||| ||||   |||| a
                u gauA GCCUUGUUA AGAG GCCA CUcg   aacu  
cugccuuuacauggca g    C         C    -    -    uuu    a 

Annotation confidence Not enough data

Genome context

Bmal_v3_scaffold153: 3437-3527 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from bma-mir-36c

Mature bma-miR-36c-3p

• Accession: MIMAT0014102
• Description: Brugia malayi bma-miR-36c-3p mature miRNA
• Sequence: 49 - UCACCGGAGACAUUGUUCCGCA - 70
• Evidence: experimental ; cloned [1], Northern [1], Illumina [2]

Mature bma-miR-36c-5p

• Accession: MIMAT0037376
• Description: Brugia malayi bma-miR-36c-5p mature miRNA
• Sequence: 9 - CGGGAUAGUCUCUCACGGUAGAGC - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498