Stem-loop bma-mir-36b

Accession

MI0013329

Description

Brugia malayi bma-mir-36b precursor miRNA

Gene family

MIPF0000096; mir-36

Literature search

1 open access papers mention bma-mir-36b
(8 sentences)

Sequence

uaacuguuCGGGAUAGUCUCUCACGGUAGAGCuugagaauaaucaaauugcUCACCGGAGACAUUAUUCCGCAuagguaugguacauuccc
...((((.(((((((((.((((.((((.((((((((......))))...)))))))))))).))))))))).))))....((......)).

Structure

------------uaa    u         C    A    A    ---    ga 
               cugu CGGGAUAGU UCUC CGGU GAGC   uuga  a
               |||| ||||||||| |||| |||| ||||   ||||   
               gauA GCCUUAUUA AGAG GCCA CUcg   aacu  u
cccuuacaugguaug    C         C    -    -    uua    aa 

Annotation confidence Not enough data

Genome context

Bmal_v3_scaffold153: 8423-8513 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from bma-mir-36b

Mature bma-miR-36b-3p

• Accession: MIMAT0014103
• Description: Brugia malayi bma-miR-36b-3p mature miRNA
• Sequence: 52 - UCACCGGAGACAUUAUUCCGCA - 73
• Evidence: experimental ; Illumina [2]

Mature bma-miR-36b-5p

• Accession: MIMAT0037377
• Description: Brugia malayi bma-miR-36b-5p mature miRNA
• Sequence: 9 - CGGGAUAGUCUCUCACGGUAGAGC - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498