miRBase entry: bma-mir-279

Stem-loop bma-mir-279

Accession

MI0013348

Description

Brugia malayi bma-mir-279 precursor miRNA

Gene family

MIPF0000184; mir-279

Literature search

2 open access papers mention bma-mir-279
(6 sentences)

Sequence

ucauucguagcugagcaugguucuuagucauguggcauguaagagauucaUGACUAGAACCAUACUCAGCuaugugacccggcauucuuaa
(((..((((((((((.((((((((.(((((((...(........)...))))))))))))))).)))))))))))))..............

Structure

--------------   uu          c        u       ugg aug 
              uca  cguagcugag augguucu agucaug   c   u
              |||  |||||||||| |||||||| |||||||   |    
              agu  guauCGACUC UACCAAGA UCAGUac   g   a
aauucuuacggccc   --          A        -       uua aga

Annotation confidence Not enough data

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Genome context

Bmal_v3_scaffold435: 4948-5038 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from bma-mir-279

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-279

Accession	MIMAT0014122
Description	Brugia malayi bma-miR-279 mature miRNA
Sequence	51 - UGACUAGAACCAUACUCAGC - 70
Evidence	experimental cloned [1], Illumina [2]

References

PubMed ID: 19874857
Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
"Poole CB, Davis PJ, Jin J, McReynolds LA"
"Mol Biochem Parasitol (2010) 169:87-94

PubMed ID: 24824352
Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
PLoS One (2014) 9:e96498