miRBase entry: osa-MIR395x

Stem-loop osa-MIR395x


Accession
MI0013350
Description
Oryza sativa osa-MIR395x precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
39 open access papers mention osa-MIR395x
(168 sentences)

Sequence

1 reads, 1 reads per million, 1 experiments
auuugguaucgccaugaguucucuucaaacucuucauacgacacuaauucaagugauguuGUGAAGUGUUUGGAGUAGCUCuuggugucaccaaac
.((((((..(((((.(((((..((((((((.(((((((((.((((......)))).)).))))))).)))))))).))))).)))))..)))))).

Structure
a      au     u     cu        u       -  a    aa 
 uuuggu  cgcca gaguu  cuucaaac cuucaua cg cacu  u
 ||||||  ||||| |||||  |||||||| ||||||| || ||||   
 aaacca  guggu CUCGA  GAGGUUUG GAAGUGu gu guga  u
c      cu     u     -U        U       u  a    ac 


Annotation confidence Not enough data
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Genome context
Chr4: 32623067-32623162 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from osa-MIR395x
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR395x

Accession MIMAT0014124
Description Oryza sativa osa-miR395x mature miRNA
Sequence 61 - GUGAAGUGUUUGGAGUAGCUC - 81
Evidence not_experimental

References

  1. PubMed ID: 19951405
    Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins
    Merchan F, Boualem A, Crespi M, Frugier F
    Genome Biol (2009) 10:R136