Stem-loop ath-MIR2934

Accession

MI0013364

Description

Arabidopsis thaliana ath-MIR2934 precursor miRNA

Gene family

MIPF0001269; MIR2934

Literature search

2 open access papers mention ath-MIR2934
(5 sentences)

Sequence

uuuauaaccUCUUUCUGCAAACGCCUUGGAuuuucuuuuggcuucauguuguucauuagaauaauagccuuuucaucuuauuuaaagaaCAUCCAAGGUGUUUGUAGAAAaagguuucaaa
.....(((((.((((((((((((((((((((.((((((.((((....(((((((....)))))))))))..............)))))).)))))))))))))))))))).))))).....

Structure

uuuau     C                    u      -------------u    ucau       a 
     aaccU UUUCUGCAAACGCCUUGGAu uucuuu              ggcu    guuguuc u
     ||||| |||||||||||||||||||| ||||||              ||||    |||||||  
     uugga AAAGAUGUUUGUGGAACCUA aagaaa              ccga    uaauaag u
aaacu     a                    C      uuuauucuacuuuu    ----       a 

Annotation confidence Not enough data

Genome context

chr3: 5500032-5500152 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR2934

Mature ath-miR2934-5p

• Accession: MIMAT0014138
• Description: Arabidopsis thaliana ath-miR2934-5p mature miRNA
• Sequence: 10 - UCUUUCUGCAAACGCCUUGGA - 30
• Evidence: experimental ; 454 [1]

Mature ath-miR2934-3p

• Accession: MIMAT0020364
• Description: Arabidopsis thaliana ath-miR2934-3p mature miRNA
• Sequence: 90 - CAUCCAAGGUGUUUGUAGAAA - 110
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20042113
   MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana
   Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H
   BMC Genomics (2009) 10:643


2. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620