miRBase entry: ath-MIR2939

Stem-loop ath-MIR2939


Accession
MI0013369
Description
Arabidopsis thaliana ath-MIR2939 precursor miRNA

Literature search
1 open access papers mention ath-MIR2939
(14 sentences)

Sequence

guugucaccguuagucuuucacuacgaugacuuauuguuguguuaccaaagaaaacauaaggcuuguguugucuuuggUAACGCACAACACUAAGCCAUcgcaguuacagacaacaaaauggcac
..(((((..(((.((((...(((.(((((.((((.(((((((((((((((((.(((((((...))))))).)))))))))..)))))))).)))).))))).)))...)))))))....))))).

Structure
gu     --cc   a    uuc   a     a    u        --         a       g 
  uguca    guu gucu   acu cgaug cuua uguugugu  uaccaaaga aacauaa  
  |||||    ||| ||||   ||| ||||| |||| ||||||||  ||||||||| ||||||| g
  acggu    caa caga   uga gcUAC GAAU ACAACACG  AUgguuucu uuguguu  
-c     aaaa   -    cau   c     C    C        CA         g       c 


Annotation confidence Not enough data
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Genome context
chr5: 19566960-19567084 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR2939
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR2939

Accession MIMAT0014143
Description Arabidopsis thaliana ath-miR2939 mature miRNA
Sequence 79 - UAACGCACAACACUAAGCCAU - 99
Evidence experimental
454 [1]

References

  1. PubMed ID: 20042113
    MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana
    Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H
    BMC Genomics (2009) 10:643