miRBase entry: rco-MIR171a

Stem-loop rco-MIR171a


Accession
MI0013398
Description
Ricinus communis rco-MIR171a precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
3 open access papers mention rco-MIR171a
(9 sentences)

Sequence

aaacgggauauugguccgguucaauaagaaaacagugcucaaaauguuaugggcccugcuuuuugaUUGAGCCGUGCCAAUAUCACGugcac
..(((.(((((((((.(((((((((.(((((.(((.(((((........))))).))).))))).))))))))).))))))))).)))....

Structure
--aa   g         c         a     a   u     aaa 
    acg gauauuggu cgguucaau agaaa cag gcuca   u
    ||| ||||||||| ||||||||| ||||| ||| |||||    
    uGC CUAUAACCG GCCGAGUUa uuuuu guc cgggu   g
cacg   A         U         g     c   c     auu 


Annotation confidence Not enough data
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Genome context
EQ973932.1: 488002-488093 [-]

Database links

Mature rco-miR171a

Accession MIMAT0014172
Description Ricinus communis rco-miR171a mature miRNA
Sequence 67 - UUGAGCCGUGCCAAUAUCACG - 87
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995