miRBase entry: rco-MIR319c

Stem-loop rco-MIR319c


Accession
MI0013408
Description
Ricinus communis rco-MIR319c precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
2 open access papers mention rco-MIR319c
(4 sentences)

Sequence

uuaagagagcucucuucaguccacucaugggcgggcgaagguuuugaauuaucugccgacucauucauucaaacacacuagaaaagggagcauuaaagauagcugcuauugugaaugugugaaugaugcgggagauaaauuucauacuucucuucucugugcUUGGACUGAAGGGAGCUCCCUuuagc
..(((.(((((((((((((((((..((((((.(((.((((....((((((((((.(((..((((((((.((..((((........((.(((..........))).))..))))..)).))))))))..))).))))))..))))..)))).))).))))))..))))))))))))))))).)))....

Structure
--uu   a                 cu      c   c    guuu    --      g   ac        u  aa    cuagaaaa  g   auua 
    aag gagcucucuucagucca  cauggg ggg gaag    ugaa  uuaucu ccg  ucauucau ca  caca        gg agc    a
    ||| |||||||||||||||||  |||||| ||| ||||    ||||  |||||| |||  |||||||| ||  ||||        || |||     
    uUC CUCGAGGGAAGUCAGGU  gugucu uuc cuuc    acuu  aauaga ggc  aguaagug gu  gugu        uc ucg    a
cgau   C                 Uc      c   u    --au    ua      g   gu        u  aa    ------ua  g   auag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
EQ974605.1: 5923-6110 [-]

Database links

Mature rco-miR319c

Accession MIMAT0014182
Description Ricinus communis rco-miR319c mature miRNA
Sequence 163 - UUGGACUGAAGGGAGCUCCCU - 183
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995