Stem-loop rco-MIR319d

Accession

MI0013409

Description

Ricinus communis rco-MIR319d precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

2 open access papers mention rco-MIR319d
(5 sentences)

Sequence

ccaaaggagcuccuuucaguccaauauggagggcuuagaagcggcaaagagcugccaucucaugcauuaaggcaauacuugacaaguuuuucacagugaaaaucucaaguuuggccuggugcauggugugggagcaacuccuucccuccuucccccacccaUUGGACUGAAGGGAGCUCCUUcuuuc
...((((((((((((((((((((((.(((.(((...((.((.((.((.(((((.((((.((((((((((.(((...((((((...(.((((((...)))))).)))))))...))))))))))))).)))).)))...)).)))))).)).))))))...)))))))))))))))))))))).....

Structure

--cca                      --a   a   cuu  a  c  c  a  ---   g    c          a   aau      caa u      c 
     aaggagcuccuuucaguccaau   ugg ggg   ag ag gg aa ga   gcu ccau ucaugcauua ggc   acuuga   g uuuuca  
     ||||||||||||||||||||||   ||| |||   || || || || ||   ||| |||| |||||||||| |||   ||||||   | |||||| a
     UUCCUCGAGGGAAGUCAGGUUa   acc ccc   uc uc cc uu cu   cga ggug gguacguggu ccg   ugaacu   c aaaagu  
cuuuc                      ccc   -   --u  c  -  -  c  caa   g    u          -   guu      --- u      g 

Annotation confidence Not enough data

Genome context

EQ974515.1: 60971-61157 [+]

Mature rco-miR319d

• Accession: MIMAT0014183
• Description: Ricinus communis rco-miR319d mature miRNA
• Sequence: 162 - UUGGACUGAAGGGAGCUCCUU - 182
• Evidence: experimental ; RT-PCR [1]

References

1. PubMed ID: 19942686
   Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
   "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
   "Nucleic Acids Res (2010) 38:981-995