miRBase entry: rco-MIR397

Stem-loop rco-MIR397


Accession
MI0013419
Description
Ricinus communis rco-MIR397 precursor miRNA
Gene family
MIPF0000120; MIR397


Sequence

aaacaUCAUUGAGUGCAGCGUUGAUGaauuccccuacaugacauauuucuguugguuaauucauuaccaauaucccuucuuuaaaaaaagaaguaaaccuuuuugggaauagaugguuuuggaugauuucaccagcgcugcauucaaucauguuuuu
((((((.((((((((((((((((.((((.((.((.(((.((......))))).))...(((((..((((.((((((((((((....))))))............))).)))..))))..))))))).)))).)))))))))))))))).))))))..

Structure
--      C                A    u  cccuacaugacauauuucuguugguua     uu    -a   -   ------------      a 
  aaacaU AUUGAGUGCAGCGUUG UGaa uc                           auuca  acca  uau ccc            uucuuu a
  |||||| |||||||||||||||| |||| ||                           |||||  ||||  ||| |||            ||||||  
  uuugua uaacuuacgucgcgac acuu ag                           uaggu  uggu  aua ggg            aagaaa a
uu      c                c    u  ---------------------------     uu    ag   a   uuuuuccaaaug      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
EQ973944.1: 359596-359752 [-]

Database links

Mature rco-miR397

Accession MIMAT0014193
Description Ricinus communis rco-miR397 mature miRNA
Sequence 6 - UCAUUGAGUGCAGCGUUGAUG - 26
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995