miRBase entry: rco-MIR398b

Stem-loop rco-MIR398b


Accession
MI0013421
Description
Ricinus communis rco-MIR398b precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
2 open access papers mention rco-MIR398b
(6 sentences)

Sequence

cuacaggagcgaccugagaaucacauguggacauucuuagcuauauauacccuuaucaucuucucuuauuuuggguuuauuguacuuugguguucuuucaUGUGUUCUCAGGUCGCCCCUGccggg
...((((.((((((((((((.((((((.((((((.(..((.((((((.((((....................)))).)).))))))..)))))))...)))))))))))))))))).)))).....

Structure
--cua    a            u      --u      u uu  c    -  u    uuaucaucu 
     cagg gcgaccugagaa cacaug   ggacau c  ag uaua ua accc         u
     |||| |||||||||||| ||||||   |||||| |  || |||| || ||||          
     GUCC CGCUGGACUCUU GUGUac   cuugug g  uc augu au uggg         c
gggcc    C            -      uuu      - uu  -    u  u    uuuuauucu 


Annotation confidence Not enough data
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Genome context
EQ974235.1: 166476-166601 [-]

Database links

Mature rco-miR398b

Accession MIMAT0014195
Description Ricinus communis rco-miR398b mature miRNA
Sequence 101 - UGUGUUCUCAGGUCGCCCCUG - 121
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995