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miRBase |
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Stem-loop sequence aae-mir-306 |
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Accession | MI0013446 (change log) | |||||||
Description | Aedes aegypti miR-306 stem-loop | |||||||
Literature search |
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4 open access papers mention aae-mir-306 | |||||||
Stem-loop |
ca uuu c c - a augugcauuucucaagcaaucucg 5' uucgcaa cac gguu agguacugag ug cucucag u ||||||| ||| |||| |||||||||| || ||||||| 3' aagcguu gug ccga ucuauggcuc ac gagaguc c aa --- a a c - ccaaaaaguuggaguccaggacuc |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2]. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence aae-miR-306-5p |
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Accession | MIMAT0014229 |
Previous IDs | aae-miR-306 |
Sequence |
20 - ucagguacugagugacucucag - 41 |
Deep sequencing | 2209 reads, 2 experiments |
Evidence | experimental; 454 [1], Illumina [2] |
Mature sequence aae-miR-306-3p |
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Accession | MIMAT0014230 |
Previous IDs | aae-miR-306* |
Sequence |
94 - gagagcaccucgguaucuaagc - 115 |
Deep sequencing | 41 reads, 2 experiments |
Evidence | experimental; Illumina [2] |
References |
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1 | |
2 |
PMID:20167119
"Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
BMC Genomics. 11:119(2010).
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