miRBase entry: aae-mir-33

Stem-loop aae-mir-33


Accession
MI0013493
Description
Aedes aegypti aae-mir-33 precursor miRNA
Gene family
MIPF0000070; mir-33

Literature search
3 open access papers mention aae-mir-33
(5 sentences)

Sequence

9385 reads, 477 reads per million, 2 experiments
ccacccggGUGCAUUGUAGUUGCAUUGCAcuuuugcguucgauaacacggugcaauacuucugcaaugcaagccaggugg
(((((.((.((((((((((..(.((((((((...(.(((....))).))))))))).)..))))))))))..)).)))))

Structure
     c  -G          UU C        uuu c   c 
ccacc gg  UGCAUUGUAG  G AUUGCAcu   g guu g
||||| ||  ||||||||||  | ||||||||   | |||  
ggugg cc  acguaacguc  c uaacgugg   c caa a
     a  ga          uu a        --- a   u 


Annotation confidence High
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.487: 351648-351727 [+]

Database links

Mature aae-miR-33

Accession MIMAT0014287
Description Aedes aegypti aae-miR-33 mature miRNA
Sequence 9 - GUGCAUUGUAGUUGCAUUGCA - 29
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119