Stem-loop sequence aae-mir-2b

Accession

MI0013512 (change log)

Description

Aedes aegypti miR-2b stem-loop

Gene family

MIPF0000049; mir-2

Literature search

3 open access papers mention aae-mir-2b
(8 sentences)

Stem-loop

     -     u     a   -      -         a   -  uuu 
5' gg gcgua ucuag cuc ucaaag uggcuguga aug gu   a
   || ||||| ||||| ||| |||||| ||||||||| ||| ||    
3' cc cgcgu agguc gag aguuuc accgacacu uac cg   u
     a     c     -   u      g         a   u  uuu 

Deep sequencing

53749 reads, 2.55e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AaegL1): supercont1.268: 887244-887330 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aae-mir-2b

• aae-mir-71: supercont1.268: 889378-889454 [-]
• aae-mir-2c: supercont1.268: 889085-889162 [-]
• aae-mir-13: supercont1.268: 888736-888819 [-]
• aae-mir-2a: supercont1.268: 888581-888677 [-]
• aae-mir-2b: supercont1.268: 887244-887330 [-]

Database links

• miRBase Tracker:MI0013512

Mature sequence aae-miR-2b

• Accession: MIMAT0014306
• Sequence: 52 - uaucacagccagcuuugaugagcu - 75
• Deep sequencing: 51854 reads, 2 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).